The Thubten Choeling Balika Vidyalaya, erstwhile known as the Jangchub Choeling Nunnery School, a residential school for girls was established by the Society under the noble guidance and philanthropic care of H.E.the 13th T.G.Rinpoche in the year 2005 to meet the educational and cultural needs of the poor, deprived, orphans and the children from remote areas of Arunachal Pradesh. However, the school started functioning from the year 2015.

Thubten Choeling Balika Vidyalaya is the first of its kind in the whole of North East region. It will work towards imparting education in the field of Buddhist philosophy, Language and Literature (Bhoti, Hindi and English), indigenous techniques in paper making, traditional handicrafts and other traditional skills to the women folk in general and nuns in particular.

The medium of instruction is Bhoti, English and Hindi. Besides, instruction in Social Science, Science and Mathematics is also imparted for blending of traditional wisdom with modern system of national education. The school works on a vision to prepare its students for facing the real life situations positively and more meaningfully. Hence, The school is well equipped with computers, Science laboratory and Library for imparting education with the help of modern suitable teaching aids.